Stem-loop sly-MIR9473

Accession

MI0029114

Description

Solanum lycopersicum sly-MIR9473 precursor miRNA

Literature search

1 open access papers mention sly-MIR9473
(1 sentences)

Sequence

uagcagauauUGGCUGUAAAUCUAAACUCGUucuacuccacuagucaucauauaaugacauuuacuagaagaagagacuauugggguaAAACGAGUUCAGAUUUACAGCcaauauuguu
.(((((.((((((((((((((((.((((((((.(((((((.(((((.((........................))))))).))))))).)))))))).)))))))))))))))))))))

Structure

u     a                A        c       c     a  auauaaugaca 
 agcag uauUGGCUGUAAAUCU AACUCGUu uacucca uaguc uc           u
 ||||| |||||||||||||||| |||||||| ||||||| ||||| ||            
 uuguu auaacCGACAUUUAGA UUGAGCAA auggggu aucag ag           u
-     -                C        A       u     -  aagaagaucau 

Annotation confidence Not enough data

Genome context

chr7: 3076297-3076415 [+]

Mature sly-miR9473-5p

• Accession: MIMAT0035461
• Description: Solanum lycopersicum sly-miR9473-5p mature miRNA
• Sequence: 11 - UGGCUGUAAAUCUAAACUCGU - 31
• Evidence: experimental ; Illumina [1]

Mature sly-miR9473-3p

• Accession: MIMAT0035462
• Description: Solanum lycopersicum sly-miR9473-3p mature miRNA
• Sequence: 89 - AAACGAGUUCAGAUUUACAGC - 109
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739