Stem-loop gsa-bantam

Accession

MI0028964

Description

Gyrodactylus salaris gsa-bantam precursor miRNA

Sequence

GCGGUUCAUGUGAUCUGAGAuuaugaaaugcugagagaggguucauuucuccucucauucUGAGAUCACACUUAUUGCUG
(((((...((((((((.(((..((((......(((.(((((.....))))))))))))))).))))))))...)))))..

Structure

--     UCA        G   uu    aaugcu   a     u 
  GCGGU   UGUGAUCU AGA  auga      gag gaggg u
  |||||   |||||||| |||  ||||      ||| ||||| c
  CGUUA   ACACUAGA Ucu  uacu      cuc cucuu a
GU     UUC        G   --    ------   -     u 

Annotation confidence Not enough data

Genome context

Unknown

Mature gsa-bantam-5p

• Accession: MIMAT0035290
• Description: Gyrodactylus salaris gsa-bantam-5p mature miRNA
• Sequence: 1 - GCGGUUCAUGUGAUCUGAGA - 20
• Evidence: experimental ; Illumina [1]

Mature gsa-bantam-3p

• Accession: MIMAT0035291
• Description: Gyrodactylus salaris gsa-bantam-3p mature miRNA
• Sequence: 61 - UGAGAUCACACUUAUUGCUG - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24025793
   Substantial loss of conserved and gain of novel MicroRNA families in flatworms
   "Fromm B, Worren MM, Hahn C, Hovig E, Bachmann L"
   "Mol Biol Evol (2013) 30:2619-2628