Stem-loop gsa-mir-2001

Accession

MI0028959

Description

Gyrodactylus salaris gsa-mir-2001 precursor miRNA

Sequence

UUGUGACCGUUUUAAUAGGCCAcacaagauuugaaugaacaacuucaauggCCUUUUAUCACGGUAACAAUG
((((.(((((..(((.((((((........(((((........))))))))))).)))..))))).))))..

Structure

--    G     UU   U      cacaagau     uga 
  UUGU ACCGU  UAA AGGCCA        uugaa   a
  |||| |||||  ||| ||||||        |||||    
  AACA UGGCA  AUU UCCggu        aacuu   c
GU    A     CU   U      --------     caa 

Annotation confidence Not enough data

Genome context

Unknown

Mature gsa-miR-2001-5p

• Accession: MIMAT0035280
• Description: Gyrodactylus salaris gsa-miR-2001-5p mature miRNA
• Sequence: 1 - UUGUGACCGUUUUAAUAGGCCA - 22
• Evidence: experimental ; Illumina [1]

Mature gsa-miR-2001-3p

• Accession: MIMAT0035281
• Description: Gyrodactylus salaris gsa-miR-2001-3p mature miRNA
• Sequence: 52 - CCUUUUAUCACGGUAACAAUG - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24025793
   Substantial loss of conserved and gain of novel MicroRNA families in flatworms
   "Fromm B, Worren MM, Hahn C, Hovig E, Bachmann L"
   "Mol Biol Evol (2013) 30:2619-2628