Stem-loop gsa-mir-1

Accession

MI0028939

Description

Gyrodactylus salaris gsa-mir-1 precursor miRNA

Sequence

UCGUACCUCGUUACAUAACCGUaauuuagauguucacaaucauuguuguaaaaugauuugugcaacauuucuuaUGGAAUGUGGCGAAGUAUGGUC
((((((.(((((((((..((((((...(((((((((((((((((.......))))).))))).))))))).)))))).))))))))).))))))..

Structure

--      C         AA      uuu       -     -     gu 
  UCGUAC UCGUUACAU  CCGUaa   agauguu cacaa ucauu  u
  |||||| |||||||||  ||||||   ||||||| ||||| |||||  g
  GGUAUG AGCGGUGUA  GGUauu   uuuacaa guguu aguaa  u
CU      A         -A      --c       c     u     aa 

Annotation confidence Not enough data

Genome context

Unknown

Mature gsa-miR-1-5p

• Accession: MIMAT0035240
• Description: Gyrodactylus salaris gsa-miR-1-5p mature miRNA
• Sequence: 1 - UCGUACCUCGUUACAUAACCGU - 22
• Evidence: experimental ; Illumina [1]

Mature gsa-miR-1-3p

• Accession: MIMAT0035241
• Description: Gyrodactylus salaris gsa-miR-1-3p mature miRNA
• Sequence: 75 - UGGAAUGUGGCGAAGUAUGGUC - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24025793
   Substantial loss of conserved and gain of novel MicroRNA families in flatworms
   "Fromm B, Worren MM, Hahn C, Hovig E, Bachmann L"
   "Mol Biol Evol (2013) 30:2619-2628