Stem-loop efu-mir-1343

Accession

MI0028889

Description

Eptesicus fuscus efu-mir-1343 precursor miRNA

Sequence

5686 reads, 83.0 reads per million, 8 experiments

ggcuucggugcUGGGGAGCGGCCCCCGGGCGGGccucugcucuggccCCUCCUGGGGCCCGCACUCUCGCUccgggcccgc
((((.(((.((.((((.((((.(((((((.(((((........)))))..))))))).)))).)))).)).)))))))...

Structure

---    u   u  U    A    C       -C     ucu 
   ggcu cgg gc GGGG GCGG CCCCGGG  GGGcc   g
   |||| ||| || |||| |||| |||||||  |||||    
   ccgg gcc CG UCUC CGCC GGGGUCC  Cccgg   c
cgc    -   U  C    A    C       UC     ucu 

Annotation confidence High

Genome context

JH977650.1: 8698308-8698388 [-]

Mature efu-miR-1343-5p

• Accession: MIMAT0058916
• Description: Eptesicus fuscus efu-miR-1343-5p mature miRNA
• Sequence: 12 - UGGGGAGCGGCCCCCGGGCGGG - 33
• Evidence: experimental ; Illumina [1]

Mature efu-miR-1343-3p

• Accession: MIMAT0035178
• Description: Eptesicus fuscus efu-miR-1343-3p mature miRNA
• Sequence: 48 - CCUCCUGGGGCCCGCACUCUCGCU - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545