Stem-loop efu-mir-23a

Accession

MI0028868

Description

Eptesicus fuscus efu-mir-23a precursor miRNA

Sequence

119178 reads, 1156.0 reads per million, 8 experiments

cauggccggcuGGGGUUCCUGGGGAUGGGAUUUgcugccuuucacaAAUCACAUUGCCAGGGAUUUCCAAUcgacccugag
((.((.(((.((((((((((((.((((.((((((.((.....)))))))).)))).))))))).))))).))).)).))..

Structure

--  u  c   c     -       G    G      c  c 
  ca gg cgg uGGGG UUCCUGG GAUG GAUUUg ug c
  || || ||| ||||| ||||||| |||| |||||| || u
  gu cc gcU ACCUU AGGGACC UUAC CUAAac ac u
ga  c  a   A     U       G    A      -  u 

Annotation confidence High

Genome context

JH977789.1: 1180495-1180575 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-23a

Mature efu-miR-23a-5p

• Accession: MIMAT0058906
• Description: Eptesicus fuscus efu-miR-23a-5p mature miRNA
• Sequence: 12 - GGGGUUCCUGGGGAUGGGAUUU - 33
• Evidence: experimental ; Illumina [1]

Mature efu-miR-23a-3p

• Accession: MIMAT0035161
• Description: Eptesicus fuscus efu-miR-23a-3p mature miRNA
• Sequence: 47 - AAUCACAUUGCCAGGGAUUUCCAAU - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545