Stem-loop efu-mir-500

Accession

MI0028857

Description

Eptesicus fuscus efu-mir-500 precursor miRNA

Sequence

4443 reads, 51.0 reads per million, 8 experiments

uggcucccucacucUAAUCCUUGCUACCUGGGUGAGAGUgcuuucugaaugcAAUGCACCUGGGCAAGGAUUCUGAgaggggcagc
..(((((((((....(((((((((...(((((((....(((.........)))...)))))))))))))))).)))).)))))...

Structure

-ug     -    cucU         UAC       AGAG   uuu 
   gcucc cuca    AAUCCUUGC   CUGGGUG    Ugc   c
   ||||| ||||    |||||||||   |||||||    |||   u
   cgggg gAGU    UUAGGAACG   GGUCCAC    Acg   g
cga     a    ---C         ---       -GUA   uaa 

Annotation confidence High

Genome context

JH977797.1: 842978-843063 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from efu-mir-500

Mature efu-miR-500-5p

• Accession: MIMAT0058897
• Description: Eptesicus fuscus efu-miR-500-5p mature miRNA
• Sequence: 15 - UAAUCCUUGCUACCUGGGUGAGAGU - 39
• Evidence: experimental ; Illumina [1]

Mature efu-miR-500-3p

• Accession: MIMAT0035152
• Description: Eptesicus fuscus efu-miR-500-3p mature miRNA
• Sequence: 53 - AAUGCACCUGGGCAAGGAUUCUGA - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545