Stem-loop efu-mir-181c

Accession

MI0028834

Description

Eptesicus fuscus efu-mir-181c precursor miRNA

Sequence

375199 reads, 3472.0 reads per million, 8 experiments

ggcuugggggAACAUUCAACCUGUCGGUGAGUUUgggcagcucaggcaaACCAUCGACCGUUGAGUGGACCccgaggccug
(((((.((((..((((((((..(((((((.(((((...........)))))))))))).))))))))..)))).)))))..

Structure

--     g    AA        CU       A     ggca 
  ggcuu gggg  CAUUCAAC  GUCGGUG GUUUg    g
  ||||| ||||  ||||||||  ||||||| |||||    c
  ccgga ccCC  GUGAGUUG  CAGCUAC CAaac    u
gu     g    AG        -C       -     ggac 

Annotation confidence High

Genome context

JH977789.1: 1151710-1151790 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-181c

Mature efu-miR-181c-5p

• Accession: MIMAT0035132
• Description: Eptesicus fuscus efu-miR-181c-5p mature miRNA
• Sequence: 11 - AACAUUCAACCUGUCGGUGAGUUU - 34
• Evidence: experimental ; Illumina [1]

Mature efu-miR-181c-3p

• Accession: MIMAT0058883
• Description: Eptesicus fuscus efu-miR-181c-3p mature miRNA
• Sequence: 50 - ACCAUCGACCGUUGAGUGGACC - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545