Stem-loop efu-mir-199-1

Accession

MI0028769

Description

Eptesicus fuscus efu-mir-199-1 precursor miRNA

Sequence

39107 reads, 922.0 reads per million, 8 experiments

gccccgucggCCCAGUGUUCAGACUACCUGUUCAGgacaaugccguugUACAGUAGUCUGCACAUUGGUUAgacugggcaa
((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).))))..

Structure

--    c   ggC       U        C   U  --  ac 
  gccc guc   CCAGUGU CAGACUAC UGU CA  Gg  a
  |||| |||   ||||||| |||||||| ||| ||  ||   
  cggg cag   GGUUACA GUCUGAUG ACA gu  cc  a
aa    u   AUU       C        -   U  ug  gu 

Annotation confidence High

Genome context

JH977644.1: 1291613-1291693 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-199-1

Mature efu-miR-199-5p

• Accession: MIMAT0058771
• Description: Eptesicus fuscus efu-miR-199-5p mature miRNA
• Sequence: 11 - CCCAGUGUUCAGACUACCUGUUCAG - 35
• Evidence: experimental ; Illumina [1]

Mature efu-miR-199-3p

• Accession: MIMAT0034946
• Description: Eptesicus fuscus efu-miR-199-3p mature miRNA
• Sequence: 49 - UACAGUAGUCUGCACAUUGGUUA - 71
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545