Stem-loop efu-mir-30d

Accession

MI0028759

Description

Eptesicus fuscus efu-mir-30d precursor miRNA

Sequence

2237335 reads, 25152.0 reads per million, 8 experiments

aagucugugguUGUAAACAUCCCCGACUGGAAGCUguaagacagaacuaagCUUUCAGUCAGAUGUUUGCUGCUaccagcuuuu
((((..(((((.(((((((((...(((((((((((..............))))))))))).))))))))).)))))..))))..

Structure

--    cu     U         CCC           guaaga 
  aagu  guggu GUAAACAUC   GACUGGAAGCU      c
  ||||  ||||| |||||||||   |||||||||||       
  uucg  caUCG CGUUUGUAG   CUGACUUUCga      a
uu    ac     U         --A           aucaag 

Annotation confidence High

Genome context

JH977754.1: 848852-848935 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-mir-30d

Mature efu-miR-30d-5p

• Accession: MIMAT0058849
• Description: Eptesicus fuscus efu-miR-30d-5p mature miRNA
• Sequence: 12 - UGUAAACAUCCCCGACUGGAAGCU - 35
• Evidence: experimental ; Illumina [1]

Mature efu-miR-30d-3p

• Accession: MIMAT0035071
• Description: Eptesicus fuscus efu-miR-30d-3p mature miRNA
• Sequence: 52 - CUUUCAGUCAGAUGUUUGCUGCU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545