Stem-loop efu-let-7c

Accession

MI0028628

Description

Eptesicus fuscus efu-let-7c precursor miRNA

Sequence

239136 reads, 3498.0 reads per million, 8 experiments

gugcauccggGUUGAGGUAGUAGGUUGUAUGGUUUagaguuauacccugggaguuaaCUGUACAACCUUCUAGCUUUCCUuggagcacacu
((((.((((((..(((.(((.(((((((((((((.....(((.....))).....))))))))))))).))).)))..))))))))))...

Structure

---    a      UU   G   U             Uagag   u 
   gugc uccggG  GAG UAG AGGUUGUAUGGUU     uua a
   |||| ||||||  ||| ||| |||||||||||||     ||| c
   cacg agguUC  UUC AUC UCCAACAUGUCaa     ggu c
uca    -      CU   G   U             uugag   c 

Annotation confidence High

Genome context

JH977643.1: 519414-519504 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from efu-let-7c

Mature efu-let-7c-5p

• Accession: MIMAT0034943
• Description: Eptesicus fuscus efu-let-7c-5p mature miRNA
• Sequence: 11 - GUUGAGGUAGUAGGUUGUAUGGUUU - 35
• Evidence: experimental ; Illumina [1]

Mature efu-let-7c-3p

• Accession: MIMAT0058769
• Description: Eptesicus fuscus efu-let-7c-3p mature miRNA
• Sequence: 58 - CUGUACAACCUUCUAGCUUUCCU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545