Stem-loop efu-mir-127

Accession

MI0028619

Description

Eptesicus fuscus efu-mir-127 precursor miRNA

Sequence

62158 reads, 791.0 reads per million, 8 experiments

acugucuccagccugCUGAAGCUCAGAGGGCUCUGAUUcagaaagaucAUCGGAUCCGUCUGAGCUUGGCUGgucggaaguc
......(((.(((.(((.(((((((((.((.((((((((.....))..)))))).)).)))))))))))).))).)))....

Structure

acuguc   a   u   G         G  C      --  a 
      ucc gcc gCU AAGCUCAGA GG UCUGAU  Uc g
      ||| ||| ||| ||||||||| || ||||||  || a
      agg ugG CGG UUCGAGUCU CC AGGCUA  ag a
--cuga   c   U   -         G  U      cu  a 

Annotation confidence High

Genome context

JH977717.1: 986736-986817 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from efu-mir-127

Mature efu-miR-127-5p

• Accession: MIMAT0058766
• Description: Eptesicus fuscus efu-miR-127-5p mature miRNA
• Sequence: 16 - CUGAAGCUCAGAGGGCUCUGAUU - 38
• Evidence: experimental ; Illumina [1]

Mature efu-miR-127-3p

• Accession: MIMAT0034933
• Description: Eptesicus fuscus efu-miR-127-3p mature miRNA
• Sequence: 49 - AUCGGAUCCGUCUGAGCUUGGCUG - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545