Stem-loop eca-mir-9185

Accession

MI0028417

Description

Equus caballus eca-mir-9185 precursor miRNA

Sequence

1628 reads, 5.0 reads per million, 124 experiments

uuaaucgguccuccguauccacgguccugcAUCCGCGGAUUGAACCAGCCACGUAguaugucuauaauaCGUGGUUGGUUGAAUCCGCAGAUGugaaacccgcggauaccgucggccgacuguac
....((((((..(.((((((.(((...((((((.(((((((.(((((((((((((.(((....))).))))))))))))).))))))).))))))....))).)))))).)..))))))......

Structure

--uuaa      cu c      a   -ucc      C       G             g   g 
      ucgguc  c guaucc cgg    ugcAUC GCGGAUU AACCAGCCACGUA uau u
      ||||||  | |||||| |||    |||||| ||||||| ||||||||||||| |||  
      agccgg  g cauagg gcc    guGUAG CGCCUAA UUGGUUGGUGCau aua c
cauguc      cu c      c   caaa      A       G             a   u 

Annotation confidence High

Genome context

18: 54741673-54741797 [-]

Mature eca-miR-9185-5p

• Accession: MIMAT0034766
• Description: Equus caballus eca-miR-9185-5p mature miRNA
• Sequence: 31 - AUCCGCGGAUUGAACCAGCCACGUA - 55
• Evidence: experimental ; Illumina [1]

Mature eca-miR-9185-3p

• Accession: MIMAT0051594
• Description: Equus caballus eca-miR-9185-3p mature miRNA
• Sequence: 70 - CGUGGUUGGUUGAAUCCGCAGAUG - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545