Stem-loop eca-mir-9171

Accession

MI0028399

Description

Equus caballus eca-mir-9171 precursor miRNA

Sequence

58 reads, 9 reads per million, 1 experiments

caaguagguuuggggucaggggagggagggagcagcacuggaagagccccugaccugggCCUGGCAGCUGUCACCCUUCCUGGgcacaucccuggcacgcacg
..........((.(((((((((((((((((.(((((..((..((.((((.......))))))..)))))))..)))))))).......)))))))).).))..

Structure

caaguagguu  g -        -------        -a     ac  ga  a    cu 
          ug g gucagggg       agggaggg  gcagc  ug  ag gccc  g
          || | ||||||||       ||||||||  |||||  ||  || ||||  a
          ac c cggucccu       UCCUUCCC  UGUCG  AC  UC Cggg  c
--------gc  g a        acacgGG        AC     --  GG  -    uc 

Annotation confidence Not enough data

Genome context

chr16: 1405576-1405678 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-9171

Mature eca-miR-9171

• Accession: MIMAT0034751
• Description: Equus caballus eca-miR-9171 mature miRNA
• Sequence: 60 - CCUGGCAGCUGUCACCCUUCCUGG - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545