Stem-loop eca-mir-9170

Accession

MI0028396

Description

Equus caballus eca-mir-9170 precursor miRNA

Sequence

7 reads, 1 reads per million, 1 experiments

gaguccugggccaucuagagaggcgguaguuacaggcaugggugucuuuggggucagucaggccugggUUUGCAUCCUGGCUCUCCCACUUauuagcugugugaucuugggcaaguuucuu
..((((.(((((.((....)))))....((((((((((((((((.....((((..(((((((..((......)).))))))))))))))))))..))).)))))))).)))).........

Structure

-------ga    u  gccaucuagagaggcggua      -   --       ucuuu    uc       cc  gg 
         gucc gg                   guuaca ggc  augggug     gggg  agucagg  ug  U
         |||| ||                   |||||| |||  |||||||     ||||  |||||||  ||   
         cggg uc                   uagugu ucg  uaUUCAC     CCUC  UCGGUCC  AC  U
uucuuugaa    u  -------------------      g   au       -----    --       -U  GU 

Annotation confidence Not enough data

Genome context

chr16: 18046864-18046984 [-]

Mature eca-miR-9170

• Accession: MIMAT0034748
• Description: Equus caballus eca-miR-9170 mature miRNA
• Sequence: 69 - UUUGCAUCCUGGCUCUCCCACUU - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545