Stem-loop eca-mir-9163

Accession

MI0028387

Description

Equus caballus eca-mir-9163 precursor miRNA

Sequence

70 reads, 11 reads per million, 1 experiments

uaugaaaaauguaaggcuucaugacaucuguucuucucacUGCCCCAAGAAGCCUGGACUUGUGgguuuguggcucugcugugcacagguccuggcgucugggugcuggagagaaggacggguuacuccacugcggcagagca
.........(((...(((.((.((.(((((((((((((.((((((((.((.(((.(((((((((.(....((((...))))).))))))))).))).)))))).)).)).)))))))))))))...))...)).)))...)))

Structure

uaugaaaaa   aag   u  --u  --c             a  -  -    A  A   U         g uuug    u 
         ugu   gcu ca   ga   aucuguucuucuc cU GC CCCA GA GCC GGACUUGUG g    uggc  
         |||   ||| ||   ||   ||||||||||||| || || |||| || ||| ||||||||| |    |||| c
         acg   cgg gu   cu   ugggcaggaagag gg cg gggu cu cgg ccuggacac u    gucg  
---------   aga   c  cac  cau             a  u  u    -  g   u         g ----    u 

Annotation confidence Not enough data

Genome context

chr17: 78381209-78381351 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-9163

Mature eca-miR-9163

• Accession: MIMAT0034740
• Description: Equus caballus eca-miR-9163 mature miRNA
• Sequence: 41 - UGCCCCAAGAAGCCUGGACUUGUG - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545