Stem-loop eca-mir-1543

Accession

MI0028380

Description

Equus caballus eca-mir-1543 precursor miRNA

Sequence

42 reads, 6 reads per million, 1 experiments

uuuugguguuguggcugaguaccuuugggcaguguuuugcaccucugagaguggaguaacuccuccuguggagUUGGUCCUAGUCUGGGUGCAAACaauuuauuucuguuagaaaaggacccugucuuaag
............(((.(.((.(((((.((((((((((.((((((...(((.((((.(((((((......))))))).))).).))))))))))))))........)))))...))))))).).))).....

Structure

uuuugguguugu   u a  a     --g     --------     u      cug   g -   g       uc 
            ggc g gu ccuuu   ggcag        uguuu gcaccu   aga u gga uaacucc  c
            ||| | || |||||   |||||        ||||| ||||||   ||| | ||| |||||||   
            cug c ca ggaaa   uuguc        aCAAA CGUGGG   UCU A CCU GUUgagg  u
-------gaauu   u c  -     aga     uuuauuua     -      ---   G U   G       ug 

Annotation confidence Not enough data

Genome context

chr14: 37373334-37373464 [-]

Mature eca-miR-1543

• Accession: MIMAT0034733
• Description: Equus caballus eca-miR-1543 mature miRNA
• Sequence: 74 - UUGGUCCUAGUCUGGGUGCAAAC - 96
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545