Stem-loop eca-mir-8908i

Accession

MI0028365

Description

Equus caballus eca-mir-8908i precursor miRNA

Sequence

41039 reads, 104.0 reads per million, 100 experiments

ggcagauccuccacuuugagccauucugugugcagugcccUACCCGGUAAGGUAGUGAUCACUUAgaugaggugugAUCACUGCCUGUCUGGGUGGAguaacgcacaacaggaacaauguuugggagggucuucagacuggugcu
((.(((((((((.(.........((((((((((..(((.((((((((..(((((((((((((...........)))))))))))))..)))))))).)))..)))).)))))).........))))))))))))...........

Structure

-----------  c         a uuugagcca      -    ag   c        UA             UUAg 
           gg agauccucc c         uucugu gugc  ugc cUACCCGG  AGGUAGUGAUCAC    a
           || ||||||||| |         |||||| ||||  ||| ||||||||  |||||||||||||    u
           cu ucugggagg g         aggaca cacg  aug GGUGGGUC  UCCGUCACUAgug    g
ucguggucaga  -         - uuuguaaca      a    ca   A        UG             ugga 

Annotation confidence High

Genome context

X: 119918721-119918865 [-]

Clustered miRNAs

17 other miRNAs are < 10 kb from eca-mir-8908i

Mature eca-miR-8908i-5p

• Accession: MIMAT0034719
• Description: Equus caballus eca-miR-8908i-5p mature miRNA
• Sequence: 41 - UACCCGGUAAGGUAGUGAUCACUUA - 65
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8908i-3p

• Accession: MIMAT0051580
• Description: Equus caballus eca-miR-8908i-3p mature miRNA
• Sequence: 77 - AUCACUGCCUGUCUGGGUGGA - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545