Stem-loop eca-mir-9143

Accession

MI0028358

Description

Equus caballus eca-mir-9143 precursor miRNA

Sequence

8484 reads, 34.0 reads per million, 60 experiments

acuauuuccucuuugguugguacauuugacccugAAGACAAAUCUGUGAUGCAGAuguaaucauauucucUGCACCGUAGGUUUGUUGUCAGgguuaaaugggcuacuuuacauggaaaca
....(((((.....(((.(((.(((((((((((((.((((((((((((.((((((.(((....)))..)))))).)))))))))))).))))))))))))).))))))......)))))..

Structure

acua     -ucuuu   u   a             A            A      -u   a 
    uuucc      ggu ggu cauuugacccugA GACAAAUCUGUG UGCAGA  gua u
    |||||      ||| ||| ||||||||||||| |||||||||||| ||||||  |||  
    aaagg      uca ucg guaaauuggGACU UUGUUUGGAUGC ACGUcu  uau c
--ac     uacauu   -   g             G            C      cu   a 

Annotation confidence Medium

Genome context

X: 119846616-119846736 [-]

Mature eca-miR-9143-5p

• Accession: MIMAT0051578
• Description: Equus caballus eca-miR-9143-5p mature miRNA
• Sequence: 35 - AAGACAAAUCUGUGAUGCAGA - 55
• Evidence: experimental ; Illumina [1]

Mature eca-miR-9143-3p

• Accession: MIMAT0034716
• Description: Equus caballus eca-miR-9143-3p mature miRNA
• Sequence: 71 - UGCACCGUAGGUUUGUUGUCAG - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545