Stem-loop eca-mir-8908l-1

Accession

MI0028351

Description

Equus caballus eca-mir-8908l-1 precursor miRNA

Sequence

397401 reads, 710.0 reads per million, 162 experiments

ugugcccguccuccaucuugagccauuuugugugcagcgcCCUGCCCAGAAUGGUUCCGAUUACGuagauaaagugUAGUCGGUGCCAUCUGGGUAGAgcgaugcucaacaugaacaacguuuggggugucuuucagagcaggug
(.(((.(......((((((((((...((((((((((.(((.(((((((((.((((.(((((((((.........))))))))).))))))))))))).))).)))...)))))))....)))))))))).......).))).)..

Structure

-- g   c -guccuc          -cau       ---   g   C         A    U         uag 
  u ugc c       caucuugagc    uuugugu   gca cgc CUGCCCAGA UGGU CCGAUUACG   a
  | ||| |       ||||||||||    |||||||   ||| ||| ||||||||| |||| |||||||||   u
  g acg g       gugggguuug    aaguaca   cgu gcg GAUGGGUCU ACCG GGCUGAUgu   a
gu g   a acuuucu          caac       acu   a   A         -    U         gaa 

Annotation confidence High

Genome context

X: 119913507-119913651 [-]

Clustered miRNAs

23 other miRNAs are < 10 kb from eca-mir-8908l-1

Mature eca-miR-8908l-5p

• Accession: MIMAT0034712
• Description: Equus caballus eca-miR-8908l-5p mature miRNA
• Sequence: 41 - CCUGCCCAGAAUGGUUCCGAUUACG - 65
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8908l-3p

• Accession: MIMAT0051575
• Description: Equus caballus eca-miR-8908l-3p mature miRNA
• Sequence: 77 - UAGUCGGUGCCAUCUGGGUAGA - 98
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545