Stem-loop eca-mir-8908h-1

Accession

MI0028348

Description

Equus caballus eca-mir-8908h-1 precursor miRNA

Sequence

47065 reads, 174.0 reads per million, 109 experiments

ggcagauucuccacuuugauccauucugugugcagugcccUAUCCAGUAAGGUACUGAUCACUUAgacuauauGGGAUCAGUGCCUGUCUGGGUGGAguaaugcuugacaggaacaacauuugggagggucuucagacuggugcu
((.(((((((((....((.....((((((..(((.(((.((((((((..(((((((((((.((..........)))))))))))))..)))))))).))).)))...))))))....))....)))))))))))...........

Structure

-----------  c         acuu  aucca      -gu   g   c        UA           A  UAga 
           gg agauucucc    ug     uucugu   gca ugc cUAUCCAG  AGGUACUGAUC CU    c
           || |||||||||    ||     ||||||   ||| ||| ||||||||  ||||||||||| ||     
           cu ucugggagg    ac     aggaca   cgu aug GGUGGGUC  UCCGUGACUAG GG    u
ucguggucaga  -         guuu  -aaca      guu   a   A        UG           -  uaua 

Annotation confidence Medium

Genome context

X: 119921749-119921893 [-]

Clustered miRNAs

12 other miRNAs are < 10 kb from eca-mir-8908h-1

Mature eca-miR-8908h-1-5p

• Accession: MIMAT0034710
• Description: Equus caballus eca-miR-8908h-1-5p mature miRNA
• Sequence: 41 - UAUCCAGUAAGGUACUGAUCACUUA - 65
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8908h-3p

• Accession: MIMAT0051573
• Description: Equus caballus eca-miR-8908h-3p mature miRNA
• Sequence: 74 - GGGAUCAGUGCCUGUCUGGGUGGA - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545