Stem-loop eca-mir-676

Accession

MI0028342

Description

Equus caballus eca-mir-676 precursor miRNA

Literature search

1 open access papers mention eca-mir-676
(1 sentences)

Sequence

115 reads, 17 reads per million, 1 experiments

gagacuucauguugguuccucaccagaaugcaugacucuucaaucucgggacucgcagaauuaauggaaugCCGUCCUAAGGUUGUUGAGUUcugcguuucugggcauuucaucucuguggggaagu
.............(.(((((((((((((((((.(((((..((((((.(((((..(((............))).))))).))))))..))))).)))).))))))..............))))))).)

Structure

gagacuucauguu g       --------------      -    u     uu      c     uc   gaauu 
             g uuccuca              ccagaa ugca gacuc  caaucu gggac  gca     a
             | |||||||              |||||| |||| |||||  |||||| |||||  |||      
             u aaggggu              ggucuu gcgu UUGAG  GUUGGA UCCUG  Cgu     a
------------- g       gucucuacuuuacg      u    c     UU      A     -C   aaggu 

Annotation confidence Not enough data

Genome context

chrX: 51938828-51938954 [+]

Mature eca-miR-676

• Accession: MIMAT0034705
• Description: Equus caballus eca-miR-676 mature miRNA
• Sequence: 72 - CCGUCCUAAGGUUGUUGAGUU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545