Stem-loop eca-mir-8908b-5

Accession

MI0028332

Description

Equus caballus eca-mir-8908b-5 precursor miRNA

Sequence

484218 reads, 896.0 reads per million, 179 experiments

gacugggcagauccuccaccaugagccaugcugugugcagugcccUACCCGGAAGGUACUGAUCACUuagccuacaugUAAUUAGUACCUGUCUGGGUAGAguaaugcucaacaagaacaacauuuguggaggccuucaga
..((((..((..(((((((.(((..........((.(((.(((.(((((((((((((((((((.((...........)).)))))))))).))))))))).))).))).))..........)))..))))))).)))))).

Structure

ga    gc  au       -c   agccaugcug  u   g   c         -          C  Uuag 
  cugg  ag  ccuccac  aug          ug gca ugc cUACCCGGA AGGUACUGAU AC    c
  ||||  ||  |||||||  |||          || ||| ||| ||||||||| |||||||||| ||    c
  gacu  uc  ggaggug  uac          ac cgu aug GAUGGGUCU UCCAUGAUUA Ug    u
-a    --  -c       uu   aacaagaaca  u   a   A         G          A  uaca 

Annotation confidence High

Genome context

X: 119904367-119904507 [-]

Clustered miRNAs

25 other miRNAs are < 10 kb from eca-mir-8908b-5

Mature eca-miR-8908b-5p

• Accession: MIMAT0061132
• Description: Equus caballus eca-miR-8908b-5p mature miRNA
• Sequence: 46 - UACCCGGAAGGUACUGAUCACU - 67
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8908b-3p

• Accession: MIMAT0034697
• Description: Equus caballus eca-miR-8908b-3p mature miRNA
• Sequence: 79 - UAAUUAGUACCUGUCUGGGUAGA - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545