Stem-loop eca-mir-9129

Accession

MI0028311

Description

Equus caballus eca-mir-9129 precursor miRNA

Sequence

4 reads, 1 reads per million, 1 experiments

ggcuggugucggggucuccugggauggaggucagaauggcguucagcagaguguggcuucugaggccaaucaaagccacUGAGGCUAAACUCUGCUGCCCGGAccgugggccacuuggaggaccuuucugacccagcccuuug
((((((.((((((((((((..((.(.(.((((.....(((....((((((((.(((((((.(.(((........))).).))))))).)))))))))))..)))).).).))....))).))))...))))))))))).....

Structure

-----      u     ---    -   --ug  a g a    agaau   guuc        g       u a   caa 
     ggcugg gucgg   gguc ucc    gg u g gguc     ggc    agcagagu uggcuuc g ggc   u
     |||||| |||||   |||| |||    || | | ||||     |||    |||||||| ||||||| | |||    
     ccgacc caguc   ccag agg    cc g u ccAG     CCG    UCGUCUCA AUCGGAG c ccg   c
guuuc      -     uuu    g   uuca  g g g    ---GC   ----        A       U a   aaa 

Annotation confidence Not enough data

Genome context

chr13: 20313470-20313612 [+]

Mature eca-miR-9129

• Accession: MIMAT0034680
• Description: Equus caballus eca-miR-9129 mature miRNA
• Sequence: 80 - UGAGGCUAAACUCUGCUGCCCGGA - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545