Stem-loop eca-mir-9088

Accession

MI0028261

Description

Equus caballus eca-mir-9088 precursor miRNA

Sequence

3 reads, 0 reads per million, 1 experiments

ugugaaaaggcgggaaacaggcgacgcucgaggcucgcgcAUGCGCACACAGUCAACUGcgucucgggcgccugaggggaagcggccuggucuguggcggcgcuguggagagggcgucccucgagccuggguu
..........((((....(((.(((((((....(((.((((.((((.((((((((.((((..(((((....))))).....))))..))).)))))...))))))))))).))))))))))....))))....

Structure

ugugaaaagg    aaac   c       gagg   g    U    --A     -   -A    ---gu     g 
          cggg    agg gacgcuc    cuc cgcA GCGC   CACAG UCA  CUGc     cucgg c
          ||||    ||| |||||||    ||| |||| ||||   ||||| |||  ||||     |||||  
          gucc    ucc cugcggg    gag gugu cgcg   guguc ggu  ggcg     gaguc g
------uugg    gagc   -       ---a   -    -    gcg     u   cc    aaggg     c 

Annotation confidence Not enough data

Genome context

chr10: 13989304-13989436 [+]

Mature eca-miR-9088

• Accession: MIMAT0034633
• Description: Equus caballus eca-miR-9088 mature miRNA
• Sequence: 41 - AUGCGCACACAGUCAACUG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545