Stem-loop eca-mir-3548

Accession

MI0028231

Description

Equus caballus eca-mir-3548 precursor miRNA

Literature search

1 open access papers mention eca-mir-3548
(1 sentences)

Sequence

67640 reads, 79.0 reads per million, 158 experiments

cuccccagcgggcggcagugggucaccuuugaaCAUCGUUACCAGACAGUGUUAGAgucgagccgagaaaucCAGCACUGUCCGGUAAGAUGCCcacaggggcccaggcgccucagccugaggacgugg
.(((.(((((((((.(..((((((.(((.((..((((.(((((.(((((((((.((.((.......))..)).))))))))).)))))))))..)).)))))))))).)))))..).))).))).....

Structure

----c   c   - --     g ag      a   u  aa    G     A         A  -g  ga 
     ucc cag c  gggcg c  uggguc ccu ug  CAUC UUACC GACAGUGUU GA  uc  g
     ||| ||| |  ||||| |  |||||| ||| ||  |||| ||||| ||||||||| ||  ||  c
     agg guc g  uccgc g  acccgg gga ac  GUAG AAUGG CUGUCACGA cu  ag  c
ggugc   a   c ac     g --      -   c  CC    -     C         C  aa  ag 

Annotation confidence High

Genome context

2: 48713785-48713913 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from eca-mir-3548

Mature eca-miR-3548-5p

• Accession: MIMAT0061131
• Description: Equus caballus eca-miR-3548-5p mature miRNA
• Sequence: 34 - CAUCGUUACCAGACAGUGUUAGA - 56
• Evidence: experimental ; Illumina [1]

Mature eca-miR-3548-3p

• Accession: MIMAT0034603
• Description: Equus caballus eca-miR-3548-3p mature miRNA
• Sequence: 73 - CAGCACUGUCCGGUAAGAUGCC - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545