Stem-loop eca-mir-1307

Accession

MI0028213

Description

Equus caballus eca-mir-1307 precursor miRNA

Literature search

3 open access papers mention eca-mir-1307
(6 sentences)

Sequence

406521 reads, 1339.0 reads per million, 237 experiments

ccagcugaguuacugccacugccuaccaaucUCGACCGGACCUCGACCGGCUCgucuauguugccaaucgACUCGGCGUGGCGUCGGUCGUGGUagauaggcggucauacauacgaauuuucaag
.(((........)))..((((((((.(.(((.(((((((.((.((.((((.(((..............))).)))))).))..))))))).))).).))))))))....................

Structure

---ccagcugaguuacugcc        c a   U       -A  U  A    C   ucuaug 
                    acugccua c auc CGACCGG  CC CG CCGG UCg      u
                    |||||||| | ||| |||||||  || || |||| |||       
                    uggcggau g UGG GCUGGCU  GG GC GGCU Agc      u
gaacuuuuaagcauacauac        a a   U       GC  U  -    C   uaaccg 

Annotation confidence High

Genome context

1: 27102414-27102538 [+]

Mature eca-miR-1307-5p

• Accession: MIMAT0051533
• Description: Equus caballus eca-miR-1307-5p mature miRNA
• Sequence: 32 - UCGACCGGACCUCGACCGGCUC - 53
• Evidence: experimental ; Illumina [1]

Mature eca-miR-1307-3p

• Accession: MIMAT0034589
• Description: Equus caballus eca-miR-1307-3p mature miRNA
• Sequence: 71 - ACUCGGCGUGGCGUCGGUCGUGGU - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545