Stem-loop eca-mir-1249

Accession

MI0028185

Description

Equus caballus eca-mir-1249 precursor miRNA

Literature search

2 open access papers mention eca-mir-1249
(2 sentences)

Sequence

19998 reads, 82.0 reads per million, 174 experiments

gucccagcucaucuuguuccucagauucuuguuugcguggggAGGAGGGAGGAGAUGGGCCAAGUUCccucugccuggaACGCCCUUCCCCCCCUUCUUCAccuggcgaacuccuacucguccuucaagacccagcucaag
.....((((..(((((..............((((((..(((((((((((.((.((.((((...(((((........))))))))).)).))))))))))).))..))))))..............)))))...))))....

Structure

guccc    -ca     uuccucagauucuu      gu  -         A  A  U    CAA     cuc 
     agcu   ucuug              guuugc  gg ggAGGAGGG GG GA GGGC   GUUCc   u
     ||||   |||||              ||||||  || ||||||||| || || ||||   |||||    
     ucga   agaac              caagcg  cc CUUCUUCCC CC CU CCCG   CAagg   g
-gaac    ccc     uuccugcucauccu      gu  A         -  C  U    ---     ucc 

Annotation confidence High

Genome context

28: 42328975-42329115 [-]

Mature eca-miR-1249-5p

• Accession: MIMAT0051529
• Description: Equus caballus eca-miR-1249-5p mature miRNA
• Sequence: 43 - AGGAGGGAGGAGAUGGGCCAAGUUC - 67
• Evidence: experimental ; Illumina [1]

Mature eca-miR-1249-3p

• Accession: MIMAT0034563
• Description: Equus caballus eca-miR-1249-3p mature miRNA
• Sequence: 80 - ACGCCCUUCCCCCCCUUCUUCA - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545