Stem-loop eca-mir-9019

Accession

MI0028182

Description

Equus caballus eca-mir-9019 precursor miRNA

Sequence

2863 reads, 433 reads per million, 1 experiments

ggggucccaguccaggcaggacucggcccgggcggugccuguguccagcuccccggugcugggcugggcugaaaugcagcAGAAGAGGCCUGGGAGUGGGUCGUAgucccaccuaccguagccgaggucaugugacugugggggu
....((((((((...(((.((((((((.(((..((((.(((((.((.((((((.(((.((..((((.(......).))))...))..))).)))))).)).)))))...))))..)))..))))).))).)))))))).)))...

Structure

gggg   -     cag   g   -     -c   gc    --c     u  a      c   -g  -gg    g cu 
    ucc caguc   gca gac ucggc  cgg  ggug   cugug cc gcuccc ggu  cu   gcug g  g
    ||| |||||   ||| ||| |||||  |||  ||||   ||||| || |||||| |||  ||   |||| |   
    ggg gucag   ugu cug agccg  gcc  ccac   gAUGC GG UGAGGG CCG  GA   cgac u  a
-ugg   u     ---   a   g     au   au    ccu     U  G      U   GA  AGA    g aa 

Annotation confidence Not enough data

Genome context

chr28: 34638021-34638165 [-]

Mature eca-miR-9019

• Accession: MIMAT0034560
• Description: Equus caballus eca-miR-9019 mature miRNA
• Sequence: 81 - AGAAGAGGCCUGGGAGUGGGUCGUA - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545