miRBase entry: eca-mir-9018

Stem-loop eca-mir-9018


Accession
MI0028181
Description
Equus caballus eca-mir-9018 precursor miRNA


Sequence

200 reads, 2.0 reads per million, 62 experiments
auguuagugaauuuuggaugaaaauuucauuccggaugAAAAAUUAGUCGCAGAAAAUgauuuucugacaaugaguaAUUUUCUGCGACUAAUUUUUCAuucggaaugacaucaucauuacacgaacucacuuccucac
..(..(((((.((((((((((..((.((((((((((((((((((((((((((((((((....(((.......)))..)))))))))))))))))))))))))))))))).))..))))).)).))).)))))..)....

Structure
--au uu     a   -  -     aa  u                                gauu   ug 
    g  aguga uuu ug gauga  au ucauuccggaugAAAAAUUAGUCGCAGAAAAU    uuc  a
    |  ||||| ||| || |||||  || ||||||||||||||||||||||||||||||||    |||  c
    c  ucacu aag ac uuacu  ua aguaaggcuuACUUUUUAAUCAGCGUCUUUUA    gag  a
cacu cu     c   c  a     ac  c                                --au   ua 


Annotation confidence High
Do you think this miRNA is real?

Genome context
28: 42904606-42904744 [-]

Database links

Mature eca-miR-9018-5p

Accession MIMAT0051528
Description Equus caballus eca-miR-9018-5p mature miRNA
Sequence 39 - AAAAAUUAGUCGCAGAAAAU - 58
Evidence experimental
Illumina [1]

Mature eca-miR-9018-3p

Accession MIMAT0034559
Description Equus caballus eca-miR-9018-3p mature miRNA
Sequence 78 - AUUUUCUGCGACUAAUUUUUCA - 99
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545