Stem-loop eca-mir-9015

Accession

MI0028177

Description

Equus caballus eca-mir-9015 precursor miRNA

Sequence

13 reads, 2 reads per million, 1 experiments

cacuggguguuacuucugagaggagaugaggucgcuggguguuacuucugagaggagaugaggucacugggugucacaUCCCAGAGGAGACGAGGUCACUGgguguuacuucugagaggagaugaggucgcuggguguuac
((((.((((((((((((...(((((.(((...((((.((((...(((((..(.(((..(((.(((....))).)))..))))..))))).......)))).))))))))))))...))))).)))...)))).))))....

Structure

----    g    ---   -     gag     a   ggu    g    ----uua     ga a   ga   g   a 
    cacu ggug   uua cuucu   aggag uga   cgcu ggug       cuucu  g gga  uga guc c
    |||| ||||   ||| |||||   ||||| |||   |||| ||||       |||||  | |||  ||| |||  
    gugg ucgc   agu gagga   ucuuc auu   gugg UCAC       GAGGA  C CCU  acu ugg u
cauu    g    ugg   a     gag     -   ---    G    UGGAGCA     GA -   ac   g   g 

Annotation confidence Not enough data

Genome context

chr9: 83343459-83343599 [-]

Mature eca-miR-9015

• Accession: MIMAT0034556
• Description: Equus caballus eca-miR-9015 mature miRNA
• Sequence: 79 - UCCCAGAGGAGACGAGGUCACUG - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545