Stem-loop eca-mir-3200

Accession

MI0028172

Description

Equus caballus eca-mir-3200 precursor miRNA

Sequence

32440 reads, 71.0 reads per million, 162 experiments

caccgaccgagagagacagaaaaggaggcggucgagggAAUCUGAGAAGGCGCACAAGGUUUGuguccaauacgcuccaCACCUUGCGCUACUCAGGUCUGCUcgugcccucccaugguaucagcucuccugcgaugugggga
..((.((((.(((((........(((((.(..((((.(.(((((((..((((((..((((..((((.....)))).....)))))))))).))))))).).))))..))))))...........)))))...))..)).))..

Structure

ca  g  --  --a     ---acagaaaa     c gu    g A       AA      CA    ---UU    c 
  cc ac  cg   gagag           ggagg g  cgag g AUCUGAG  GGCGCA  AGGU     Gugu c
  || ||  ||   |||||           ||||| |  |||| | |||||||  ||||||  ||||     |||| a
  gg ug  gc   cucuc           ccucc c  gcUC U UGGACUC  UCGCGU  UCCA     cgca a
ag  g  ua  guc     gacuaugguac     - gu    G C       -A      --    Caccu    u 

Annotation confidence High

Genome context

gb|PJAA01004051.1|: 51933-52075 [-]

Mature eca-miR-3200-5p

• Accession: MIMAT0051527
• Description: Equus caballus eca-miR-3200-5p mature miRNA
• Sequence: 39 - AAUCUGAGAAGGCGCACAAGGUUUG - 63
• Evidence: experimental ; Illumina [1]

Mature eca-miR-3200-3p

• Accession: MIMAT0034551
• Description: Equus caballus eca-miR-3200-3p mature miRNA
• Sequence: 80 - CACCUUGCGCUACUCAGGUCUGCU - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545