Stem-loop eca-mir-9009

Accession

MI0028170

Description

Equus caballus eca-mir-9009 precursor miRNA

Sequence

3 reads, 0 reads per million, 1 experiments

gacaaucguguggccuuggcacugcuugauggugcccaggAGAAGACUGAGGCUCCCCGCccagggucuggagccgggccucaagcugugucuccauugcccgggcuccacagcagugggcugacuucagggcac
............((((((((((((((.(.(((.((((.(((((((..((((((((...((((((...)))).)).))))))))..))...))))).......)))).)))))))))))........)))))))..

Structure

gacaaucgugug       --------       u a   u    ------a     ---  AC        CCC  -    g 
            gccuugg        cacugcu g ugg gccc       ggAGA   AG  UGAGGCUC   GC ccag  
            |||||||        ||||||| | ||| ||||       |||||   ||  ||||||||   || |||| g
            cgggacu        gugacga c acc cggg       ccucu   uc  acuccggg   cg gguc  
----------ca       ucagucgg       - -   u    cccguua     gug  ga        --c  a    u 

Annotation confidence Not enough data

Genome context

chr8: 29009099-29009233 [+]

Mature eca-miR-9009

• Accession: MIMAT0034549
• Description: Equus caballus eca-miR-9009 mature miRNA
• Sequence: 41 - AGAAGACUGAGGCUCCCCGC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545