Stem-loop eca-mir-9005

Accession

MI0028165

Description

Equus caballus eca-mir-9005 precursor miRNA

Sequence

17 reads, 3 reads per million, 1 experiments

ccugcccggcucucugagcacuucccuggagucugugcaaacaugagaacaggaacgaaagcagucucguucccgUGUUUGUGGGAUGAAGGCAGGAGCCcagaggcgagaagaggcuggggcagcaaaagcccc
(((.....((.(((((.((.(((.(((...((((..(((((((((......(((((((........)))))))))))))))).))))..))).))).)).)))))))......)))..(((((.......)))))

Structure

-------------------   -gcccg  u     a  a   c   gga    gu         agaaca       aag 
                   ccu      gc cucug gc cuu ccu   gucu  gcaaacaug      ggaacga   c
                   |||      || ||||| || ||| |||   ||||  |||||||||      |||||||    
                   gga      cg gagac CG GGA GGA   UAGG  UGUUUGUgc      ccuugcu   a
ccccgaaaacgacgggguc   gaagag  -     C  A   C   -AG    -G         ------       cug 

Annotation confidence Not enough data

Genome context

chr8: 13095969-13096103 [+]

Mature eca-miR-9005

• Accession: MIMAT0034545
• Description: Equus caballus eca-miR-9005 mature miRNA
• Sequence: 76 - UGUUUGUGGGAUGAAGGCAGGAGCC - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545