Stem-loop eca-mir-9001

Accession

MI0028161

Description

Equus caballus eca-mir-9001 precursor miRNA

Sequence

25 reads, 4 reads per million, 1 experiments

cccgagcgguaacccaggagcggaggcgaaGAGAUCUCGCAGGCGGCCGGCUGUGaggauugacagcuggcuuucuggaaaaucgcagccccggcuccuucgaccccucccccauuuccugagcc
...(((.(((.....((((((((.(((...((....((.((((.((((((((((........)))))))))).))))))...))...))))).))))))...))).)))................

Structure

-------------ccc   c   aaccc      -  a   gaa  GAUC  G    C          Gag 
                gag ggu     aggagc gg ggc   GA    UC CAGG GGCCGGCUGU   g
                ||| |||     |||||| || |||   ||    || |||| ||||||||||    
                cuc cca     uccucg cc ccg   cu    ag gucu ucggucgaca   a
ccgaguccuuuacccc   c   --gcu      g  -   acg  -aaa  -    u          guu 

Annotation confidence Not enough data

Genome context

chr7: 78288029-78288153 [-]

Mature eca-miR-9001

• Accession: MIMAT0034541
• Description: Equus caballus eca-miR-9001 mature miRNA
• Sequence: 31 - GAGAUCUCGCAGGCGGCCGGCUGUG - 55
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545