miRBase entry: eca-mir-8993-1

Stem-loop eca-mir-8993-1


Accession
MI0028150
Description
Equus caballus eca-mir-8993-1 precursor miRNA


Sequence

1507 reads, 85.0 reads per million, 9 experiments
uccaucuccagggucucccacaaagaggucgcuucCUGCAGGGUCAAGGACAAGGUCAGGuaggccaugcucccuucggcaugugucccaggcccuugaucuuggacccuggacaucucguguguguggcugcuc
..........((((..((((((..(((((.(.....(.(((((((.(((((((((((.((..(((((((((......)))))).))))).)).))))).)))).))))))).)))))))...)))).))..))))

Structure
uccaucucca    cu  -    -aa     c cuucC G       A    -     -  A  ua   -      cc 
          gggu  cc caca   gaggu g     U CAGGGUC AGGA CAAGG UC GG  ggc caugcu  c
          ||||  || ||||   ||||| |     | ||||||| |||| ||||| || ||  ||| ||||||   
          cucg  gg gugu   cucua c     a gucccag uucu guucc gg cc  cug guacgg  u
----------    uc  u    gug     - ----- g       g    a     c  a  --   u      cu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
7: 54351910-54352044 [-]

Database links

Mature eca-miR-8993-5p

Accession MIMAT0034531
Description Equus caballus eca-miR-8993-5p mature miRNA
Sequence 36 - CUGCAGGGUCAAGGACAAGGUCAGG - 60
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545