Stem-loop eca-mir-8992

Accession

MI0028148

Description

Equus caballus eca-mir-8992 precursor miRNA

Sequence

12353 reads, 50.0 reads per million, 171 experiments

cccgcugucagccgcacucgggccACCGGGUGCAGCCGGCACGCGcuugccgggcacccCGCGCUGCAGGCUGCGCCCGGGGAcggggaggcgggagcuccuc
...(((.((.(((...((((..((.((((((((((((.(((.((((.....(((...)))))))))).)))))))))))))).))))..))))).))).....

Structure

--ccc   g  a   gca    gg  A            G   C    uugcc   c 
     gcu uc gcc   cucg  cc CCGGGUGCAGCC GCA GCGc     ggg  
     ||| || |||   ||||  || |||||||||||| ||| ||||     ||| a
     cga gg cgg   gggc  GG GGCCCGCGUCGG CGU CGCG     Ccc  
cuccu   g  -   -ag    -A  -            A   -    -----   c 

Annotation confidence High

Genome context

7: 46235200-46235302 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from eca-mir-8992

Mature eca-miR-8992-5p

• Accession: MIMAT0051522
• Description: Equus caballus eca-miR-8992-5p mature miRNA
• Sequence: 25 - ACCGGGUGCAGCCGGCACGCG - 45
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8992-3p

• Accession: MIMAT0034529
• Description: Equus caballus eca-miR-8992-3p mature miRNA
• Sequence: 60 - CGCGCUGCAGGCUGCGCCCGGGGA - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545