Stem-loop eca-mir-8982

Accession

MI0028138

Description

Equus caballus eca-mir-8982 precursor miRNA

Sequence

135 reads, 1.0 reads per million, 38 experiments

acuggcacugacucugcuuccaaacgaggccgcucuguguCACCCGGGGUAGGACUUCAGCAcaggaggucgaggggcugcgguccagcccugaguggagcaggccggcugcagucgagaggggaugcagcacccaggc
.((((..(((..(((.(((....((..(((((.(((((.((((.((((((.(((((.((((.(..(....)..)..)))).))))).)))))).)))).))))).)))))...))...))).)))..)))...))))..

Structure

-a    -ca   ac   g   ccaa  -ga     c     g    C      A     U    -A ag a 
  cugg   cug  ucu cuu    ac   ggccg ucugu uCAC CGGGGU GGACU CAGC  c  g g
  ||||   |||  ||| |||    ||   ||||| ||||| |||| |||||| ||||| ||||  |  |  
  gacc   gac  agg gag    ug   ucggc ggacg ggug gucccg ccugg gucg  g  c g
cg    cac   gu   g   -agc  acg     c     a    a      a     c    gg ag u 

Annotation confidence Not enough data

Genome context

7: 3592293-3592431 [+]

Mature eca-miR-8982-5p

• Accession: MIMAT0034519
• Description: Equus caballus eca-miR-8982-5p mature miRNA
• Sequence: 41 - CACCCGGGGUAGGACUUCAGCA - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545