Stem-loop eca-mir-8980

Accession

MI0028136

Description

Equus caballus eca-mir-8980 precursor miRNA

Sequence

30 reads, 5 reads per million, 1 experiments

gccggagagcagacauuaggaaugauguguagugcaaggcgcuuagccucacagcagagagCUAGCCUUACCCAUCCCUGGGgcccucugucucugaucgcccacca
..((((((.((((..(((((...((((.(((.....((((...(((((((......))).))))))))))).))))))))).....))))))))))...........

Structure

---------gc      g    ---ca     aau    u   gugca    gcu    -   ac 
           cggaga caga     uuagg   gaug gua     aggc   uagc cuc  a
           |||||| ||||     |||||   |||| |||     ||||   |||| |||   
           gucucu gucu     GGUCC   CUAC CAU     UCCG   AUCg gag  g
accacccgcua      -    cccgG     ---    C   -----    ---    a   ac 

Annotation confidence Not enough data

Genome context

chr6: 31383164-31383270 [+]

Mature eca-miR-8980

• Accession: MIMAT0034517
• Description: Equus caballus eca-miR-8980 mature miRNA
• Sequence: 62 - CUAGCCUUACCCAUCCCUGGG - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545