Stem-loop eca-mir-8977

Accession

MI0028133

Description

Equus caballus eca-mir-8977 precursor miRNA

Sequence

1167 reads, 4.0 reads per million, 108 experiments

auuggaacacuuggagagcuuguuaaaacaguaugcaacuugAGCCAUACUCCAGUCUUACUGAUuuacagaguauagcAGUGAGGCGAGGGUAUGACUCUACaguuguacacuaaaaauacgccagguaucagguuuacaaa
.(((....((((((...(((((.......(((.(((((((.(((.(((((((..(((((((((...(((...)))...)))))))))..))))))).)))...))))))).)))..........))))).))))))...))).

Structure

a   gaac      aga     ---uuaaaac   a       --u   C       CA         AUu   a 
 uug    acuugg   gcuug          agu ugcaacu   gAG CAUACUC  GUCUUACUG   uac  
 |||    ||||||   |||||          ||| |||||||   ||| |||||||  |||||||||   ||| g
 aac    uggacu   uggac          uca auguuga   CUC GUAUGGG  CGGAGUGAc   aug  
a   -auu      --a     cgcauaaaaa   c       CAU   A       AG         gau   a 

Annotation confidence High

Genome context

6: 41118360-41118502 [-]

Mature eca-miR-8977-5p

• Accession: MIMAT0051519
• Description: Equus caballus eca-miR-8977-5p mature miRNA
• Sequence: 43 - AGCCAUACUCCAGUCUUACUGAU - 65
• Evidence: experimental ; Illumina [1]

Mature eca-miR-8977-3p

• Accession: MIMAT0034514
• Description: Equus caballus eca-miR-8977-3p mature miRNA
• Sequence: 80 - AGUGAGGCGAGGGUAUGACUCUAC - 103
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545