miRBase entry: eca-mir-8973

Stem-loop eca-mir-8973


Accession
MI0028129
Description
Equus caballus eca-mir-8973 precursor miRNA


Sequence

50 reads, 1.0 reads per million, 33 experiments
augcccaauggccccaugcggauaaccagugguccCUUUGAGCCUGACCUUUAcaagucugagauggagguccaggacgcagagcucaagguuagugugggaugaaaguggugagcaagug
..(((....)))(((((((...(((((..(((...(((((.(((((((((((((........).))))))).)))).).))))).))).))))))))))))....................

Structure
--------augcccaauggc       gga     ag   ucc     A -    -       - aag 
                    cccaugc   uaacc  ugg   CUUUG G CCUG ACCUUUA c   u
                    |||||||   |||||  |||   ||||| | |||| ||||||| |    
                    gggugug   auugg  acu   gagac c ggac uggaggu g   c
gugaacgaguggugaaagua       ---     -a   --c     g a    c       a agu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
6: 74697837-74697957 [+]

Database links

Mature eca-miR-8973-5p

Accession MIMAT0034510
Description Equus caballus eca-miR-8973-5p mature miRNA
Sequence 36 - CUUUGAGCCUGACCUUUA - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545