Stem-loop eca-mir-8958

Accession

MI0028111

Description

Equus caballus eca-mir-8958 precursor miRNA

Sequence

5 reads, 1 reads per million, 1 experiments

aggcauaaaauaaggaugugcaucaugugggagggaggaaGGAUGAUUGUCCCUUUGCUGCUuccauggcugggugagcucagaggguuaauuaucuuaccucuccacaguuucuccugcgguuguugccuucauggau
(((((..((...((((...((....(((((...(((((.((((((((((.(((((((..(((((((....)))..)))).))))))).)))))))))).))))))))))))...))))....))..)))))........

Structure

--------     ua  -aua    ugu  auca     gag     a          U       CU    --   u 
        aggca  aa    agga   gc    ugugg   ggagg aGGAUGAUUG CCCUUUG  GCUu  cca g
        |||||  ||    ||||   ||    |||||   ||||| |||||||||| |||||||  ||||  |||  
        uccgu  uu    uccu   ug    acacc   ucucc uucuauuaau gggagac  cgag  ggu g
uagguacu     ug  ggcg    cuu  ----     ---     a          u       -u    ug   c 

Annotation confidence Not enough data

Genome context

chr21: 11650786-11650924 [-]

Mature eca-miR-8958

• Accession: MIMAT0034492
• Description: Equus caballus eca-miR-8958 mature miRNA
• Sequence: 41 - GGAUGAUUGUCCCUUUGCUGCU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545