Stem-loop eca-mir-8945

Accession

MI0028091

Description

Equus caballus eca-mir-8945 precursor miRNA

Sequence

12 reads, 2 reads per million, 1 experiments

uguucagugcaggauuuuggucuuuugaaaCUCAAAGGAUACGGGCUCUUGAAcucaaaaaccuuuuuugcucaagacuguaguccuugccuugaguuucaaaggccuguuuugaaccuca
.((((((.(((((........(((((((((((((((((((((((..((((((...((((((...)))))).)))))))))).)))))....))))))))))))))))))).))))))....

Structure

---u      u     auuuuggu              ----     -    GC      Acu      c 
    guucag gcagg        cuuuugaaaCUCAA    AGGAU ACGG  UCUUGA   caaaaa  
    |||||| |||||        ||||||||||||||    ||||| ||||  ||||||   |||||| c
    caaguu ugucc        ggaaacuuugaguu    uccug uguc  agaacu   guuuuu  
acuc      u     --------              ccgu     a    --      --c      u 

Annotation confidence Not enough data

Genome context

NW_001867699.1: 84685-84805 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-8945

Mature eca-miR-8945

• Accession: MIMAT0034474
• Description: Equus caballus eca-miR-8945 mature miRNA
• Sequence: 31 - CUCAAAGGAUACGGGCUCUUGAA - 53
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545