Stem-loop eca-mir-8910

Accession

MI0028045

Description

Equus caballus eca-mir-8910 precursor miRNA

Sequence

41 reads, 6 reads per million, 1 experiments

uggcugugcaucgacuggcacuguggauagucggccuuggUGAAGAACUGGGCACAGCCCACGAUguugguggccgugagcgucguggcagugucgucccacauggccagcacacacaggucguagccagucccugacaccaggu
.(((((.((..((((.....(((((..(.((.((((...(((........(((((.(((.((((((((.(......).))))))))))).)))))....)))..)))).)))..)))))))))..)))))))((((....)))).

Structure

------------u     u  au    uggca     ga a  c    uug   AAGAACUG     A   C        g ug 
             ggcug gc  cgac     cugug  u gu ggcc   gUG        GGCAC GCC ACGAUguu g  g
             ||||| ||  ||||     |||||  | || ||||   |||        ||||| ||| |||||||| |   
             cugac cg  gcug     gacac  a cg ccgg   cac        cugug cgg ugcugcga u  c
uggaccacagucc     -  au    -----     ac -  a    -ua   ----ccug     a   -        g gc 

Annotation confidence Not enough data

Genome context

chr20: 39839804-39839948 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-8910

Mature eca-miR-8910

• Accession: MIMAT0034438
• Description: Equus caballus eca-miR-8910 mature miRNA
• Sequence: 41 - UGAAGAACUGGGCACAGCCCACGAU - 65
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545