Stem-loop cfa-mir-8834a-2

Accession

MI0028031

Description

Canis lupus familiaris cfa-mir-8834a-2 precursor miRNA

Sequence

323 reads, 3.0 reads per million, 51 experiments

aggagcuacagcccuaguggcggggccagCUCUGGAAACCUGGAUUCagcucuggcaggaacuccggagcucuccgucugccgggccuggaggcuccggggcggggccgcugaucUGCUCAGCUGGGGCAGGAGCGUCuuu
(((.(((...(((((((((((((((((.((((((((..(((....((((.(((((((((.....((((....))))))))))))).))))))).))))))))..))))......)))))..))))))))...))).)))..

Structure

--   a   aca        --     ------    -a        AA   GGAU    c         aacuc    g 
  agg gcu   gcccuagu  ggcgg      ggcc  gCUCUGGA  CCU    UCag ucuggcagg     cgga c
  ||| |||   ||||||||  |||||      ||||  ||||||||  |||    |||| |||||||||     ||||  
  uCU CGA   CGGGGUCG  UCGUc      ccgg  cggggccu  gga    gguc gggccgucu     gccu u
uu   G   GGA        AC     uagucg    gg        -c   ----    c         -----    c 

Annotation confidence Low

Genome context

X: 48348569-48348709 [-]

Mature cfa-miR-8834a-5p

• Accession: MIMAT0051975
• Description: Canis lupus familiaris cfa-miR-8834a-5p mature miRNA
• Sequence: 30 - CUCUGGAAACCUGGAUUC - 47
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-8834a-3p

• Accession: MIMAT0034327
• Description: Canis lupus familiaris cfa-miR-8834a-3p mature miRNA
• Sequence: 116 - UGCUCAGCUGGGGCAGGAGCGUC - 138
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545