Stem-loop cfa-mir-8899

Accession

MI0028010

Description

Canis lupus familiaris cfa-mir-8899 precursor miRNA

Sequence

5 reads, 1.0 reads per million, 4 experiments

gggcgggauggggggaugucagucaccccuGUUGGGGUCCAUGCGUCUAGGACaggcuggaaaggucauggcuugggugccugcacagcacagggcuuacaggggagcaggggucccgggg
............(((((.((.((..(((((((..((((((.((.(.((.(..(((((....(((.......)))....)))))..)))).))))))))))))))).)).)).)))))....

Structure

gggcgggauggg     g  a  ca       UG      A  C U  A GA     ugga   gu 
            gggau uc gu  ccccuGU  GGGUCC UG G CU G  Caggc    aag  c
            ||||| || ||  |||||||  |||||| || | || |  |||||    |||  a
            cccug gg cg  ggggaca  uucggg ac c ga c  guccg    uuc  u
--------gggg     g  a  -a       --      -  a -  - ac     uggg   gg 

Annotation confidence Not enough data

Genome context

3: 92866483-92866603 [+]

Mature cfa-miR-8899-5p

• Accession: MIMAT0034409
• Description: Canis lupus familiaris cfa-miR-8899-5p mature miRNA
• Sequence: 31 - GUUGGGGUCCAUGCGUCUAGGAC - 53
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545