Stem-loop cfa-mir-8895

Accession

MI0028004

Description

Canis lupus familiaris cfa-mir-8895 precursor miRNA

Sequence

52 reads, 4.0 reads per million, 18 experiments

ugauuuucaggugugggcacuugggggagcugcucagcccccugccuggugccgggcucagugagugauguuuauccuguUUAUCUGGUGAGGGCACUGUGAGGCucaguggggguuguuuaccccgugaggcccagggaggaac
.........((..(((((((((....))).))))))..))(((.(((((.(((.(.((((...((((.(.((((.((.........)))))).))))).)))).)(((.(((((........)))))))))))))))).)))...

Structure

ugauuuucaggugugggcacuugggggagcugcucagccc   g     u   ------------------------g g    gug    a g    u  ugu 
                                        ccu ccugg gcc                         g cuca   agug u uuua cc   U
                                        ||| ||||| |||                         | ||||   |||| | |||| ||   U
                                        gga ggacc cgg                         C GAGU   UCAC G GAGU GG   A
-------------------------------------caa   g     -   agugccccauuuguugggggugacu G    --G    - G    -  UCU 

Annotation confidence Not enough data

Genome context

gb|JAAUVH010000293.1|: 60208-60352 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cfa-mir-8895

Mature cfa-miR-8895-3p

• Accession: MIMAT0034403
• Description: Canis lupus familiaris cfa-miR-8895-3p mature miRNA
• Sequence: 81 - UUAUCUGGUGAGGGCACUGUGAGGC - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545