Stem-loop cfa-mir-769

Accession

MI0027998

Description

Canis lupus familiaris cfa-mir-769 precursor miRNA

Sequence

351241 reads, 658.0 reads per million, 82 experiments

caucugggcugaccuggugcugauuccugcgcucugaccUGAGACCUCUGGGUUCUGAGCUgugauguuccuuccaagCUGGGAUCUCUGGGGUCUUGGUUcagggucggggccucuggguuaugagcaccagcgaggaca
....((..((...((((((((.((.((((.((((((((((((((((((.(((.(((.((((..((.......))..)))).))).))).))))))))......))))))))))...))))..)).))))))))..))..))

Structure

cauc  gg  gac        g  -u    --c          ------        U   U   G    gu  ug 
    ug  cu   cuggugcu au  ccug   gcucugaccU      GAGACCUC GGG UCU AGCU  ga  u
    ||  ||   |||||||| ||  ||||   ||||||||||      |||||||| ||| ||| ||||  ||  u
    ac  ga   gaccacga ua  gggu   cggggcuggg      UUCUGGGG CUC AGG UCga  cu  c
----  ag  -gc        g  uu    cuc          acUUGG        U   U   G    ac  uc 

Annotation confidence Medium

Genome context

1: 110149510-110149650 [-]

Mature cfa-miR-769-5p

• Accession: MIMAT0051995
• Description: Canis lupus familiaris cfa-miR-769-5p mature miRNA
• Sequence: 40 - UGAGACCUCUGGGUUCUGAGCU - 61
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-769-3p

• Accession: MIMAT0034400
• Description: Canis lupus familiaris cfa-miR-769-3p mature miRNA
• Sequence: 79 - CUGGGAUCUCUGGGGUCUUGGUU - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545