Stem-loop cfa-mir-6516

Accession

MI0027991

Description

Canis lupus familiaris cfa-mir-6516 precursor miRNA

Sequence

7787 reads, 18.0 reads per million, 79 experiments

ggcccaguuccccccgggguuuggauUUGCAGUAACAGGUGUGAACAuucuagcagcaguuugaugAUCAUGUAUGAUACUGCAAACAggacccgcgcggaggucuggcuuccgc
((.((((..((.((((((((((.(.(((((((((.((..(((((.((((..(((....))).)))).)))))..)).)))))))))).)))))).)).)).)).))))...))..

Structure

--  --c    uu  c  -  -      g a         A  GG     A    cu   a 
  gg   ccag  cc cc cg ggguuu g uUUGCAGUA CA  UGUGA CAuu  agc g
  ||   ||||  || || || |||||| | ||||||||| ||  ||||| ||||  |||  
  cc   gguc  gg gg gc cccagg C AAACGUCAU GU  GUACU guag  uug c
cg  uuc    -u  a  c  g      A -         A  AU     A    -u   a 

Annotation confidence High

Genome context

9: 4454167-4454281 [-]

Mature cfa-miR-6516-5p

• Accession: MIMAT0034393
• Description: Canis lupus familiaris cfa-miR-6516-5p mature miRNA
• Sequence: 27 - UUGCAGUAACAGGUGUGAACA - 47
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-6516-3p

• Accession: MIMAT0051992
• Description: Canis lupus familiaris cfa-miR-6516-3p mature miRNA
• Sequence: 67 - AUCAUGUAUGAUACUGCAAACA - 88
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545