Stem-loop cfa-mir-3958

Accession

MI0027985

Description

Canis lupus familiaris cfa-mir-3958 precursor miRNA

Sequence

115685 reads, 356.0 reads per million, 79 experiments

gaggacgagcguggucacagaagcuggucugagauguucgaaaggAGGUUGUCCGUGAUGUAUUUGCUUuguuuauggcAGAUAUUGCACGGUUGAUCUCUUuucaucaucaaaugccuucuugaaggacccgcggcacgu
........(((.((((....(((..(((.(..((((...(((((((((((..(((((..(((((((((........)))))))))..)))))..)))))))))))..))))..).)))..)))....))))))).......

Structure

gaggacga   u    acag   cu   c ga    uuc           GU     AU         Uug 
        gcg gguc    aag  ggu u  gaug   gaaaggAGGUU  CCGUG  GUAUUUGCU   u
        ||| ||||    |||  ||| |  ||||   |||||||||||  |||||  |||||||||    
        cgc ccag    uuc  ccg a  cuac   cuuUUCUCUAG  GGCAC  UAUAGAcgg   u
-ugcacgg   -    gaag   uu   u aa    -ua           UU     GU         uau 

Annotation confidence High

Genome context

8: 69548845-69548985 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from cfa-mir-3958

Mature cfa-miR-3958-5p

• Accession: MIMAT0051991
• Description: Canis lupus familiaris cfa-miR-3958-5p mature miRNA
• Sequence: 46 - AGGUUGUCCGUGAUGUAUUUGCUU - 69
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-3958-3p

• Accession: MIMAT0034388
• Description: Canis lupus familiaris cfa-miR-3958-3p mature miRNA
• Sequence: 80 - AGAUAUUGCACGGUUGAUCUCUU - 102
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24692655
   Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
   "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
   "Mol Biol Evol (2014) 31:1536-1545